Short answer. Yes. Article 294 of the Revised Penal Code, as amended by Republic Act No. 7659, imposes a heavier penalty when the violence or intimidation used in a robbery is carried to a degree clearly unnecessary for committing the crime, above the penalty that applies to ordinary robbery with violence in other cases.
What the law says
The penalty of prision mayor in its maximum period to reclusion temporal in its medium period, if the violence or intimidation employed in the commission of the robbery shall have been carried to a degree clearly unnecessary for the commission of the crime
Revised Penal Code, Article 294 — Robbery With Violence Against Or Intimidation Of Persons. Read the full provision →
What the law says
The penalty of prision correccional in its maximum period to prision mayor in its medium period in other cases.
Revised Penal Code, Article 294 — Robbery With Violence Against Or Intimidation Of Persons. Read the full provision →
Article 294 grades the penalty by what actually happened
Article 294 does not set one fixed penalty for robbery with violence or intimidation. It runs through a series of graded penalties, from the most severe down to a residual, catch-all category, depending on what occurred during the robbery — homicide, rape, specific categories of physical injury, and, relevant to your question, whether the violence used went beyond what the crime required.
Excessive violence has its own, heavier bracket
One of those brackets addresses exactly the situation you are asking about: The penalty of prision mayor in its maximum period to reclusion temporal in its medium period, if the violence or intimidation employed in the commission of the robbery shall have been carried to a degree clearly unnecessary for the commission of the crime. Using force well beyond what was needed to complete the robbery is treated as its own, more serious category, independent of whether a specific injury from the article's other subdivisions was inflicted.
How this compares to ordinary robbery with violence
Article 294 sets a lower penalty for robbery with violence that does not fall into any of its more serious brackets: The penalty of prision correccional in its maximum period to prision mayor in its medium period in other cases. That residual bracket is what applies when the violence used was ordinary for the crime, which is noticeably lighter than the bracket for violence carried to a clearly unnecessary degree.
Reading the article's penalties today
The text above reflects the article as amended by Republic Act No. 7659; older reproductions of the Revised Penal Code still print the original 1930 penalties, which differ. Where this article's highest bracket refers to death, Republic Act No. 9346 has since prohibited imposing the death penalty in the Philippines, so reclusion perpetua applies in its place — a separate correction from the excessive-violence question you asked, but worth knowing when reading the rest of the article.